The PANGEA database holds over 31,600 NGS sequence files from sub-Saharan Africa with basic epidemiological metadata associated with them. For some cohorts, extensive metadata is available; use the metadata tab to explore this data and contact us for more information.
We currently obtain full genomes from ~ 90% of high-quality samples, with many of the less-complete sequences originating from participants who are likely to be virally suppressed. See the resources section for sequencing protocols used.
Sampling Period | Number of Sequences | |
---|---|---|
Country | ||
Botswana | 2004-2018 | 7,572 |
Kenya | 2005-2013 | 1,257 |
South Africa | 2004-2020 | 3,969 |
Tanzania | 2005-2008 | 47 |
Uganda | 2005-2019 | 11,433 |
Zambia | 2013-2018 | 7,409 |